Files in YuLab-SMU/BMplot
BMplot for Base Modification Visulization
.Rbuildignore
.gitignore
BMplot.Rproj
DESCRIPTION
NAMESPACE
NEWS.md
R/AllClasses.R
R/AllGenerics.R
R/BMplot-package.R
R/BSseq-class.R
R/aaplot.R
R/bmData-class.R
R/data.R
R/getBaseModificationDf.R
R/makebmData.R
R/plotBaseModificationProf.R
R/utilities.R
R/zzz.R
README.Rmd
README.md
data-raw/A_thaliana_IPO_data_procession.R
data-raw/A_thaliana_data_procession.R
data-raw/Human_data_procession.R
data-raw/simulated_A_thaliana_data_procession.R
data-raw/simulated_bed_file_procession.R
data/A_thaliana_BSobj.rda
data/A_thaliana_dmR.rda
data/Human_BSobj.rda
data/Human_dmR.rda
data/simulated_BSobj.rda
data/simulated_IPD.rda
data/simulated_dmR.rda
inst/extdata/simulated_bed_file/GSM1295076_CBX6_BF_simulated.bed.gz
inst/extdata/simulated_bed_file/GSM1295077_CBX7_BF_simulated.bed.gz
inst/extdata/simulated_txt_file/GSM1295076_CBX6_BF_simulated.txt.gz
inst/extdata/simulated_txt_file/GSM1295077_CBX7_BF_simulated.txt.gz
man/A_thaliana_BSobj.Rd
man/A_thaliana_dmR.Rd
man/BMplot-package.Rd
man/Human_BSobj.Rd
man/Human_dmR.Rd
man/SamepleBedFiles.Rd
man/SamepleTxtFiles.Rd
man/SampleFileFolder.Rd
man/bmData-class.Rd
man/bmData.Rd
man/create_regex_patterns_negative.Rd
man/create_regex_patterns_positive.Rd
man/getBaseModificationDf-methods.Rd
man/getBaseModificationDf.BSseq.Rd
man/getBaseModificationDf.bmData.Rd
man/makebmDataFromData-methods.Rd
man/makebmDataFromData.Rd
man/makebmDataFromFiles.Rd
man/plotBaseModificationProf.Rd
man/reexports.Rd
man/simulated_BSobj.Rd
man/simulated_IPD.Rd
man/simulated_dmR.Rd
tests/testthat.R
tests/testthat/test-getBaseModificationDf.R
vignettes/.gitignore
vignettes/BMplot.Rmd
vignettes/BMplot.bib
vignettes/figures/bmdata.png
vignettes/figures/different_modifications.png
vignettes/figures/dmR_list.png
vignettes/figures/genetrack.png
vignettes/figures/highlight.png
vignettes/figures/highlight_list.png
vignettes/figures/readme.png
vignettes/figures/special_motif.png
