makebmDataFromData: makebmDataFromData.internal

In YuLab-SMU/BMplot: BMplot for Base Modification Visulization

makebmDataFromData.internal

Description

make dmData object from data

Usage

makebmDataFromData.internal(data, sampleNames = NULL)

Arguments

data	lists object
sampleNames	the name of each samples

Details

This internal function was inspired by DSS::makeBSseqData.

The objects in data must have specific forms. Colunms should be features, which should be organized in the order of "chr", "pos", "value1", "value2(optional)". chr stands for chromosome. pos stands for position on chromosome, also known as coordinates. value1/2 stands for the value on each base. The colnames can be any character but must be in the order. Rows stands for each observation.

Value

dmData object

YuLab-SMU/BMplot documentation built on June 1, 2025, 4:09 p.m.