Man pages for YuLab-SMU/BMplot
BMplot for Base Modification Visulization
| A_thaliana_BSobj | Arabidopsis thaliana BSseq object created by DSS |
| A_thaliana_dmR | Different methylation region created by DSS |
| bmData | Constructor for bmData objects |
| bmData-class | bmData Class |
| BMplot-package | Base Modification visualization |
| create_regex_patterns_negative | create regex patterns in negative strand |
| create_regex_patterns_positive | create regex patterns in positive strand |
| getBaseModificationDf.bmData | get the information of base modification |
| getBaseModificationDf.BSseq | get the information of base modification |
| getBaseModificationDf-methods | getBaseModificationDf methods generics |
| Human_BSobj | Human BSseq object created by DSS |
| Human_dmR | Different methylation region created by DSS |
| makebmDataFromData | makebmDataFromData.internal |
| makebmDataFromData-methods | makebmDataFromData method generics |
| makebmDataFromFiles | This function makes bmData object from files. Users can input... |
| plotBaseModificationProf | plotBaseModificationProf |
| reexports | Objects exported from other packages |
| SamepleBedFiles | Get the sample bed files |
| SamepleTxtFiles | Get the sample txt files |
| SampleFileFolder | get the sample file folder name |
| simulated_BSobj | Simulated arabidopsis thaliana BSseq object created by DSS |
| simulated_dmR | Different methylation region created by simulation |
| simulated_IPD | Simulated IPD data of A_thaliana |
