godata: godata

View source: R/godata.R

godataR Documentation

godata

Description

prepare GO DATA for measuring semantic similarity

Usage

godata(
  OrgDb = NULL,
  annoDb = NULL,
  keytype = "ENTREZID",
  ont,
  computeIC = TRUE,
  processTCSS = FALSE,
  cutoff = NULL
)

Arguments

OrgDb

OrgDb object (will be removed in future, please use annoDb instead)

annoDb

GO annotation database, can be OrgDb or a data.frame contains three columns of 'GENE', 'GO' and 'ONTOLOGY'.

keytype

keytype

ont

one of 'BP', 'MF', 'CC'

computeIC

logical, whether computer IC

processTCSS

logical, whether to process TCSS

cutoff

cutoff of TCSS

Value

GOSemSimDATA object

Author(s)

Guangchuang Yu


YuLab-SMU/GOSemSim documentation built on Aug. 25, 2024, 3 a.m.