godata: godata

In YuLab-SMU/GOSemSim: GO-terms Semantic Similarity Measures

godata

Description

prepare GO DATA for measuring semantic similarity

Usage

godata(
  OrgDb = NULL,
  annoDb = NULL,
  keytype = "ENTREZID",
  ont,
  computeIC = TRUE,
  processTCSS = FALSE,
  cutoff = NULL
)

Arguments

OrgDb	OrgDb object (will be removed in future, please use annoDb instead)
annoDb	GO annotation database, can be OrgDb or a data.frame contains three columns of 'GENE', 'GO' and 'ONTOLOGY'.
keytype	keytype
ont	one of 'BP', 'MF', 'CC'
computeIC	logical, whether computer IC
processTCSS	logical, whether to process TCSS
cutoff	cutoff of TCSS

Value

GOSemSimDATA object

Author(s)

Guangchuang Yu

YuLab-SMU/GOSemSim documentation built on Nov. 1, 2024, 4:43 a.m.