read-gaf: read.gaf
In YuLab-SMU/GOSemSim: GO-terms Semantic Similarity Measures
read.gaf R Documentation
read.gaf
Description
parse GAF files
Usage
read.gaf(file, asis = FALSE, add_indirect_GO = FALSE)
parse_gff(file, asis = FALSE, add_indirect_GO = FALSE)
Arguments
file
GAF file
asis
logical, whether output the original contains of the file and only works if 'add_indirect_GO = FALSE'
add_indirect_GO
whether to add indirect GO annotation
Details
given a GAF file, this function extracts the information from it
Value
A data.frame. Original table if 'asis' works, otherwise contains 3 conlumns of 'GENE', 'GO' and 'ONTOLOGY'
YuLab-SMU/GOSemSim documentation built on Nov. 1, 2024, 4:43 a.m.
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| read.gaf | R Documentation |
read.gaf
Description
parse GAF files
Usage
read.gaf(file, asis = FALSE, add_indirect_GO = FALSE)
parse_gff(file, asis = FALSE, add_indirect_GO = FALSE)
Arguments
file |
GAF file |
asis |
logical, whether output the original contains of the file and only works if 'add_indirect_GO = FALSE' |
add_indirect_GO |
whether to add indirect GO annotation |
Details
given a GAF file, this function extracts the information from it
Value
A data.frame. Original table if 'asis' works, otherwise contains 3 conlumns of 'GENE', 'GO' and 'ONTOLOGY'
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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