Files in YuLab-SMU/ggtree

an R package for visualization of tree and annotation data

.github/issue_template.md CONDUCT.md CONTRIBUTING.md CONTRIBUTORS.md NEWS.md R/AllGenerics.R R/Date.R R/as.polytomy.R R/axis.R R/clade-functions.R R/defunct.R R/experimental_function.R R/facet-utilities.R R/facet_plot.R R/format.R R/fortify-utilities.R R/geom-zoom-clade.R R/geom_balance.R R/geom_cladelab.R R/geom_cladelabel.R R/geom_cladelabel2.R R/geom_hilight.R R/geom_hilight_encircle.R R/geom_label.R R/geom_nodelab.R R/geom_point.R R/geom_range.R R/geom_rootedge.R R/geom_segment.R R/geom_strip.R R/geom_taxalink.R R/geom_text.R R/geom_tiplab.R R/geom_tree.R R/geom_treescale.R R/ggdensitree.R R/ggplot-add-utilities.R R/ggtree-package.R R/ggtree.R R/gheatmap.R R/inset.R R/layout.R R/method-MRCA.R R/method-fortify.R R/method-ggplot-add.R R/method-groupClade.R R/method-groupOTU.R R/method-nodeid.R R/method-offspring.R R/method-print.r R/method-scale-color.R R/msaplot.R R/multiplot.R R/operator.R R/reexports.R R/scales.R R/theme.R R/tidytree.R R/tree-utilities.R R/treeio.R R/utilities.R R/zzz.R README.Rmd README.md man/Date2decimal.Rd man/add_TREEINFO.Rd man/add_colorbar.Rd man/applyLayoutDaylight.Rd man/as.polytomy.Rd man/collapse.Rd man/decimal2Date.Rd man/expand.Rd man/facet-plot.Rd man/facet_data.Rd man/facet_labeller.Rd man/facet_widths.Rd man/flip.Rd man/geom-hilight.Rd man/geom_aline.Rd man/geom_balance.Rd man/geom_cladelab.Rd man/geom_cladelabel.Rd man/geom_cladelabel2.Rd man/geom_label2.Rd man/geom_motif.Rd man/geom_nodelab.Rd man/geom_nodelab2.Rd man/geom_nodepoint.Rd man/geom_point2.Rd man/geom_range.Rd man/geom_rootedge.Rd man/geom_rootpoint.Rd man/geom_segment2.Rd man/geom_strip.Rd man/geom_striplab.Rd man/geom_taxalink.Rd man/geom_text2.Rd man/geom_tiplab.Rd man/geom_tiplab2.Rd man/geom_tippoint.Rd man/geom_tree.Rd man/geom_tree2.Rd man/geom_treescale.Rd man/geom_zoom_clade.Rd man/get.path.Rd man/getNodeAngle.df.Rd man/getNodesBreadthFirst.df.Rd man/getSubtree.Rd man/getSubtree.df.Rd man/getSubtreeUnrooted.Rd man/getSubtreeUnrooted.df.Rd man/getTreeArcAngles.Rd man/get_clade_position.Rd man/get_heatmap_column_position.Rd man/get_taxa_name.Rd man/ggdensitree.Rd man/ggexpand.Rd man/ggtree-format-painter.Rd man/ggtree-ggproto.Rd man/ggtree-package.Rd man/ggtree.Rd man/gheatmap.Rd man/gzoom-methods.Rd man/gzoom.phylo.Rd man/inset.Rd man/label_pad.Rd man/layoutDaylight.Rd man/layoutEqualAngle.Rd man/msaplot.Rd man/multiplot.Rd man/nodebar.Rd man/nodepie.Rd man/open_tree.Rd man/range_format.Rd man/reexports.Rd man/revts.Rd man/rotate.Rd man/rotateTreePoints.Rd man/rotate_tree.Rd man/scale-color-subtree.Rd man/scaleClade.Rd man/scale_color-methods.Rd man/scale_x_ggtree.Rd man/scale_x_range.Rd man/set_hilight_legend.Rd man/theme_dendrogram.Rd man/theme_inset.Rd man/theme_tree.Rd man/theme_tree2.Rd man/tree-layout.Rd man/viewClade.Rd man/xlim_expand.Rd man/xlim_tree.Rd man/zoomClade.Rd tests/testthat.R tests/testthat/test-conversion.R tests/testthat/test-geom_balance.R tests/testthat/test-geom_cladelabel.R tests/testthat/test-geom_hilight.R tests/testthat/test-group.R tests/testthat/test-xlim_expand.R vignettes/ggtree.Rmd