SNP368annot.data: Annotation data of 368SNPs

In Yuande/GMRP: GWAS-based Mendelian Randomization and Path Analyses

Description

The annotation data of 368SNPs are used to construct SNP distribution in gene elements (coding region, introne,UTR, etc). The data contain 12 vectors or variables but only Symbol and function_unit are used by ucscannot.R to build SNP distribution in gene elements.

Usage

data("SNP368annot.data")

Format

A data frame with 1053 observations on the following 6 variables.

SNP

a string vector

Allele

a string vector

Strand

a numeric vector

Symbol

a string vector

Gene

a string vector

function_unit

a string vector

Details

SNP368annot.data were obtained by performing mktable with PV=5x10e-08,Pc=Pd=0.979 on lpd.data and cad.data and SNP tools. SNP368annot.data provides an practical example for constructing distribution of SNPs in gene elements. Note that function_units are gene elements.

Value

A dataset with 1053 rows and 6 columns for results of SNP annotation analysis. See format above.

Source

http://csg.sph.umich.edu//abecasis/public/lipids2013/

References

http://snp-nexus.org/test/snpnexus_19427/

Examples

data(SNP368annot.data)

Yuande/GMRP documentation built on May 29, 2019, 11:04 p.m.