lpd.data: *GWAS* Meta-analyzed Data of Lipoprotein Cholesterols
In Yuande/GMRP: GWAS-based Mendelian Randomization and Path Analyses
Description
Usage
Format
Details
Value
Source
References
Examples
Description
lpd.data are standard GWAS Meta-analyzed dataset of lipoprotein cholesterols. It was constructed by merging four datasets: Mc_HDL.txt,Mc_LDL.txt, Mc_TC.txt and Mc_TG.txt.
Usage
1
data("lpd.data")
Format
A data frame with 1609 observations on the following 40 variables.
SNP_hg18.HDLa character vector
SNP_hg19.HDLa character vector
rsid.HDLa character vector
A1.HDLa character vector
A2.HDLa character vector
beta.HDLa numeric vector
se.HDLa numeric vector
N.HDLa numeric vector
P.value.HDLa numeric vector
Freq.A1.1000G.EUR.HDLa numeric vector
SNP_hg18.LDLa character vector
SNP_hg19.LDLa character vector
rsid.LDLa character vector
A1.LDLa character vector
A2.LDLa character vector
beta.LDLa numeric vector
se.LDLa numeric vector
N.LDLa numeric vector
P.value.LDLa numeric vector
Freq.A1.1000G.EUR.LDLa numeric vector
SNP_hg18.TGa character vector
SNP_hg19.TGa character vector
rsid.TGa character vector
A1.TGa character vector
A2.TGa character vector
beta.TGa numeric vector
se.TGa numeric vector
N.TGa numeric vector
P.value.TGa numeric vector
Freq.A1.1000G.EUR.TGa numeric vector
SNP_hg18.TCa character vector
SNP_hg19.TCa character vector
rsid.TCa character vector
A1.TCa character vector
A2.TCa character vector
beta.TCa numeric vector
se.TCa numeric vector
N.TCa numeric vector
P.value.TCa numeric vector
Freq.A1.1000G.EUR.TCa numeric vector
Details
These four GWAS Meta-analyzed data of lipoprotein cholesterols were downloaded from the following website.
Value
A data sheet consisting of 1609 rows (SNPs) and 40 columns(character vectors such as SNPID and allele, numeric vector such as allele frequency, beta coefficient. See data format above).
Source
http://csg.sph.umich.edu//abecasis/public/lipids2013/
References
Willer CJ et al. Discovery and refinement of loci associated with lipid levels. Nat. Genet. 2013. doi:10.1038/ng.2797.
Examples
1
2
Yuande/GMRP documentation built on May 29, 2019, 11:04 p.m.
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Description Usage Format Details Value Source References Examples
Description
lpd.data are standard GWAS Meta-analyzed dataset of lipoprotein cholesterols. It was constructed by merging four datasets: Mc_HDL.txt,Mc_LDL.txt, Mc_TC.txt and Mc_TG.txt.
Usage
1 | data("lpd.data")
|
Format
A data frame with 1609 observations on the following 40 variables.
SNP_hg18.HDLa character vector
SNP_hg19.HDLa character vector
rsid.HDLa character vector
A1.HDLa character vector
A2.HDLa character vector
beta.HDLa numeric vector
se.HDLa numeric vector
N.HDLa numeric vector
P.value.HDLa numeric vector
Freq.A1.1000G.EUR.HDLa numeric vector
SNP_hg18.LDLa character vector
SNP_hg19.LDLa character vector
rsid.LDLa character vector
A1.LDLa character vector
A2.LDLa character vector
beta.LDLa numeric vector
se.LDLa numeric vector
N.LDLa numeric vector
P.value.LDLa numeric vector
Freq.A1.1000G.EUR.LDLa numeric vector
SNP_hg18.TGa character vector
SNP_hg19.TGa character vector
rsid.TGa character vector
A1.TGa character vector
A2.TGa character vector
beta.TGa numeric vector
se.TGa numeric vector
N.TGa numeric vector
P.value.TGa numeric vector
Freq.A1.1000G.EUR.TGa numeric vector
SNP_hg18.TCa character vector
SNP_hg19.TCa character vector
rsid.TCa character vector
A1.TCa character vector
A2.TCa character vector
beta.TCa numeric vector
se.TCa numeric vector
N.TCa numeric vector
P.value.TCa numeric vector
Freq.A1.1000G.EUR.TCa numeric vector
Details
These four GWAS Meta-analyzed data of lipoprotein cholesterols were downloaded from the following website.
Value
A data sheet consisting of 1609 rows (SNPs) and 40 columns(character vectors such as SNPID and allele, numeric vector such as allele frequency, beta coefficient. See data format above).
Source
http://csg.sph.umich.edu//abecasis/public/lipids2013/
References
Willer CJ et al. Discovery and refinement of loci associated with lipid levels. Nat. Genet. 2013. doi:10.1038/ng.2797.
Examples
1 2 |
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