lpd.data: *GWAS* Meta-analyzed Data of Lipoprotein Cholesterols

Description Usage Format Details Value Source References Examples

Description

lpd.data are standard GWAS Meta-analyzed dataset of lipoprotein cholesterols. It was constructed by merging four datasets: Mc_HDL.txt,Mc_LDL.txt, Mc_TC.txt and Mc_TG.txt.

Usage

1
data("lpd.data")

Format

A data frame with 1609 observations on the following 40 variables.

SNP_hg18.HDL

a character vector

SNP_hg19.HDL

a character vector

rsid.HDL

a character vector

A1.HDL

a character vector

A2.HDL

a character vector

beta.HDL

a numeric vector

se.HDL

a numeric vector

N.HDL

a numeric vector

P.value.HDL

a numeric vector

Freq.A1.1000G.EUR.HDL

a numeric vector

SNP_hg18.LDL

a character vector

SNP_hg19.LDL

a character vector

rsid.LDL

a character vector

A1.LDL

a character vector

A2.LDL

a character vector

beta.LDL

a numeric vector

se.LDL

a numeric vector

N.LDL

a numeric vector

P.value.LDL

a numeric vector

Freq.A1.1000G.EUR.LDL

a numeric vector

SNP_hg18.TG

a character vector

SNP_hg19.TG

a character vector

rsid.TG

a character vector

A1.TG

a character vector

A2.TG

a character vector

beta.TG

a numeric vector

se.TG

a numeric vector

N.TG

a numeric vector

P.value.TG

a numeric vector

Freq.A1.1000G.EUR.TG

a numeric vector

SNP_hg18.TC

a character vector

SNP_hg19.TC

a character vector

rsid.TC

a character vector

A1.TC

a character vector

A2.TC

a character vector

beta.TC

a numeric vector

se.TC

a numeric vector

N.TC

a numeric vector

P.value.TC

a numeric vector

Freq.A1.1000G.EUR.TC

a numeric vector

Details

These four GWAS Meta-analyzed data of lipoprotein cholesterols were downloaded from the following website.

Value

A data sheet consisting of 1609 rows (SNPs) and 40 columns(character vectors such as SNPID and allele, numeric vector such as allele frequency, beta coefficient. See data format above).

Source

http://csg.sph.umich.edu//abecasis/public/lipids2013/

References

Willer CJ et al. Discovery and refinement of loci associated with lipid levels. Nat. Genet. 2013. doi:10.1038/ng.2797.

Examples

1
2
data(lpd.data)
## maybe str(lpd.data) ; plot(lpd.data) ...

Yuande/GMRP documentation built on May 29, 2019, 11:04 p.m.