DistStatis-CompromisePlot: Compromise-Plot

In Yuliaxis/LinkHD: LinkHD: a versatile framework to explore and integrate heterogeneous data

Description

Plot a CompromisePlot of a DiStatis object

Usage

## S4 method for signature 'DistStatis'
CompromisePlot(x,x_lab=NULL, y_lab=NULL,
Name=NULL, pchPoints=2, colObs=NULL,...)

Arguments

x	DistStatis class object.
x_lab	a character indicating x_label. Default is x.
y_lab	a character indicating y_label. Default is y.
Name	a character indicating plot title.
pchPoints	pch for points in scatter plot.
colObs	is a character indicating the color for the observations. By Default is the QR (indicating the Quality of Representation of observations)
...	additional parameters from ggplot2 library

Value

plotted CompromisePlot/s of the component/s of the given DistStatis object.

Author(s)

Laura M. Zingaretti

Examples

{

data(Taraoceans)
pro.phylo <- Taraoceans$taxonomy[ ,'Phylum']
TaraOc<-list(Taraoceans$phychem,as.data.frame(Taraoceans$pro.phylo),
as.data.frame(Taraoceans$pro.NOGs))
TaraOc_1<-scale(TaraOc[[1]])
Normalization<-lapply(list(TaraOc[[2]],TaraOc[[3]]),
function(x){DataProcessing(x,Method='Compositional')})
colnames(Normalization[[1]])=pro.phylo
colnames(Normalization[[2]])=Taraoceans$GO
TaraOc<-list(TaraOc_1,Normalization[[1]],Normalization[[2]])
names(TaraOc)<-c('phychem','pro_phylo','pro_NOGs')
TaraOc<-lapply(TaraOc,as.data.frame)
Output<-LinkData(TaraOc,Scale =FALSE,Distance = c('ScalarProduct','Euclidean','Euclidean'))
CompromisePlot(Output) +
theme(panel.grid.major = element_blank(), panel.grid.minor = element_blank(),
panel.background = element_blank(), axis.line = element_line(colour = 'black'))


}

Yuliaxis/LinkHD documentation built on April 9, 2020, 12:02 a.m.