API for ZWang-Lab/LSKAT
SNP-set (Sequence) Kernel Association Test for longitudinal data.

Global functions
Get_Lambda Source code
Get_PValue.Lambda Source code
Get_SKAT_Residuals.Get_X1 Source code
SKAT_Scale_Genotypes Source code
SKAT_Scale_Genotypes_snp Source code
SKAT_davies Source code
SKAT_liu Source code
SKAT_liu.MOD Source code
check_covariate_file Source code
check_geneset_file Source code
check_pheno_file Source code
check_plink_file Source code
clone_plink_refer Source code
colSds Source code
convert_simpe_to_plink Source code
draw_manhattan Source code
est_gen_Q Source code
est_gen_Q.R Source code
est_snp_Q Source code
est_snp_Q.R Source code
f.mmn.ar1 Source code
f.mn.ar1 Source code
f.mn.cs Source code
f.mn.sad Source code
f.mt.ar1 Source code
f.sn.ar1 Source code
get_Qu_pvalue Source code
get_Qv_pvalue Source code
get_default_options Source code
get_gen_family Source code
get_gen_group Source code
get_gen_individuals Source code
get_gen_mat Source code
get_large_file_lines Source code
get_snp_mat Source code
get_weights Source code
get_ylog_list Source code
load_gene_plink Source code
longskat_est_ML Source code
longskat_est_REML Source code
longskat_est_model Man page Source code
longskat_gene_plink Man page Source code
longskat_gene_simulate Man page Source code
longskat_gene_task Source code
longskat_gene_test Man page Source code
longskat_get_gene Man page Source code
longskat_plink_load Man page Source code
longskat_snp_plink Man page Source code
longskat_snp_task Source code
longskat_snp_test Man page Source code
plot.LSKAT.gen.plink Man page Source code
plot.LSKAT.snp.plink Man page Source code
print.LSKAT.gen.plink Source code
print.LSKAT.gen.ret Source code
print.LSKAT.null.model Source code
print.LSKAT.snp.plink Source code
print.LSKAT.snp.ret Source code
read_gen_dataset Source code
read_gen_phe_cov Source code
read_gen_plink Source code
read_phe_cov Source code
show_options Source code
shrink_snpmat Source code
simu.long.phe.none Source code
simu.long.phe.power Source code
simu_snp_mat Source code
snp_impute Source code
summary.LSKAT.gen.plink Man page Source code
summary.LSKAT.snp.plink Man page Source code
sync_gen_individuals Source code
ZWang-Lab/LSKAT documentation built on Oct. 30, 2017, 8:33 p.m.