summary.LSKAT.gen.plink: Summarizing the LSKAT results for all genes

In ZWang-Lab/LSKAT: SNP-set (Sequence) Kernel Association Test for longitudinal data.

Description

Summarizing the LSKAT results for all genes in PLINK data set

Usage

summary.LSKAT.gen.plink(r.lskat)

Arguments

r.lskat

The list object with S3 class name: LSKAT.gen.plink, obtained from longskat_gene_plink.

See Also

longskat_gene_plink

Examples

## data simulation for the power test
p0 <- longskat_gene_simulate( plink.format=T, file.plink.prefix="tmp-gene-plink", 
      power.test=T );

## LSKAT test
r.lskat1 <- longskat_gene_plink(p0$file.plink.bed, p0$file.plink.bim, p0$file.plink.fam, 
      p0$file.phe.long, p0$file.phe.cov, NULL, p0$file.gene.set, 
      options=list(g.maxiter=3, plink.path="plink", est.method = "ML"), verbose=T );

## sumamry information, this function
df <- summary(r.lskat1);

## check the sumamry information
show(df);

ZWang-Lab/LSKAT documentation built on May 10, 2019, 1:55 a.m.