bigVcfFilter: filterVCFin

In ZhangRenL/quickHapR: R Packages for Gene Haplotype Analysis

filterVCFin

Description

filterVCFin

Usage

bigVcfFilter(VCFin = "", VCFout = "",
              Chr = Chr, POS = POS, overWrite = TRUE)

Arguments

VCFin	Path of input vcf file
VCFout	Path of output vcf file
Chr	CHROM name
POS	a vector consist with start and end postion
overWrite	Overwrite output file or not, defalt is TRUE

Examples

## Not run: 
 bigVcfFilter(VCFin = "Ori.vcf.gz", VCFout = "filtered.vcf.gz",
              Chr = "scaffold_8", POS = c(19802,24501), overWrite = TRUE)
              
## End(Not run)

ZhangRenL/quickHapR documentation built on June 17, 2022, 12:04 a.m.