hap_result | R Documentation |
summarize hap result and output a txt file
hap_result(hap, hapPrefix = "H", out = FALSE, file = "hapResult.txt")
hap |
hap |
hapPrefix |
prefix of hap names |
out |
write hap results to a txt file |
file |
file path |
data.frame, first four rows are fixed to meta information: CHR, POS, INFO, ALLELE Hap names were placed in col1, Accessions and freqs were placed at the last two cols.
data("quickHap_test") # Your vcf data should imported by `import_vcf()` here hap <- get_hap(vcf, hyb_remove = TRUE, na.drop =TRUE) hapResult <- hap_result(hap) plotHapTable(hapResult)
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