gffSetATGas0: gffSetATGas0

In ZhangRenL/quickHapR: R Packages for Gene Haplotype Analysis

gffSetATGas0

Description

set ATG posision as 0.

Usage

gffSetATGas0(gff = gff, hap = hap,
             geneID = geneID,
             Chr = Chr, POS = c(start, end))

Arguments

gff	imported gff
hap	hap result with meta infos
geneID	geneID
Chr	Chrom name
POS	vector defined by start and end position

Value

filtered gff with set ATG position as 0

Examples

data("quickHap_test")
hap <- get_hap(vcf)
gffn <- gffSetATGas0(gff = gff, hap = hap,
                  geneID = "test1G0387",
                  Chr = "scaffold_1",
                  POS = c(4300, 7910))

ZhangRenL/quickHapR documentation built on June 17, 2022, 12:04 a.m.