getGeneRanges: getGeneRanges

View source: R/getGenePOS.R

getGeneRangesR Documentation

getGeneRanges

Description

getGeneRanges

Usage

getGeneRanges(gff= gff,
             geneID = geneID,
             type = type,
             gffTermContaingeneID = "Parent")

Arguments

gff

imported gff

geneID

target geneID

type

vector consist with one or more types in gff

gffTermContaingeneID

which term contains the geneID in your gff, defalt is Parent

Examples

data("quickHap_test")
geneRanges <- getGeneRanges(gff = gff,
                            geneID = "test1G0387",
                            type = "CDS",
                            gffTermContaingeneID = "Parent")

ZhangRenL/quickHapR documentation built on June 17, 2022, 12:04 a.m.