Linear model analysis on RNA modification data.

distance_map | calculate the distance to the nearest 5' or 3' subject... |

find_longest_transcript | Find the longest transcript given an GRangesList object... |

glm_bas | Conduct bayesian model selection, inference, and... |

glm_multinomial | Build and visualize a logistic model to analyze the... |

glm_regular | Build and visualize a generalized linear model. |

go_multinomial | Run GO analysis over methylation sets with multi-class... |

group_list_expanded | An alternative group list |

Infer_loop | Infer looped RNA 2ndary structures given provided hybridized... |

plot_row_joint | Plot the joint distribution between rows of a genomic assay. |

predictors_annot | Generate predictors/features for a range based RNA... |

predictors_annot_old | Generate predictors/features for a range based RNA... |

Properties_map | Dealing with ambiguities of the GRanges in query that may... |

Reduce_correlated_rows | Subset the rows/genomic features that are close on genomic... |

Relative_Pos_map | Calculate the relative position of a GRanges object on... |

Sample_sequence | Sample nucleotides or motifs on a subset of genome defined by... |

sequence_features | Generate the sequence feature matrix from GRanges. |

sequence_features_old | Generate the sequence feature matrix from GRanges. |

Struc_hg19 | MEA RNA 2ndary structures of hg19 exons predicted by RNAfold |

Struc_mm10 | MEA RNA 2ndary structures of mm10 exons predicted by RNAfold |

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