distance_map: calculate the distance to the nearest 5' or 3' subject...

In ZhenWei10/m6ALogisticModel: Linear model analysis on RNA modification data.

Description

distance_map calculate the distance to the nearest 5' or 3' end.

Usage

distance_map(query_gr, subject_gr, end = c("five", "three"),
  maximum_distance = 2000, standardize = T)

Arguments

query_gr	The query GRanges.
subject_gr	The subject GRanges.
end	Can be "five" or "three", indicating the distance to the five prime end or three prime end.
maximum_distance	The maximum distance returned, the un-defined distances are set to this value also, default is 2000.
standardize	wheather standardize the output distance, i.e. minus the means and dividing the standard deviations.

Value

a vector of mapped distances with the length equal to query_gr.

ZhenWei10/m6ALogisticModel documentation built on May 17, 2019, 10:11 p.m.