Infer_loop: Infer looped RNA 2ndary structures given provided hybridized...
In ZhenWei10/m6ALogisticModel: Linear model analysis on RNA modification data.
Description
Usage
Arguments
Value
Description
infer_loop is used to extract the roughly accurate looped regions beween closed hybridized pairs given regions of hybridization.
Usage
1
infer_loop(struc_sterm, length_cut_off = 30)
Arguments
struc_sterm
a GRanges or GRangesList object that indicates the hybridized structure region on each transcript.
length_cut_off
the allowed maximum pairing distance between 2 hybridized regions, the default setting is 30.
Due to the crude algorithm defined by this function, The higher this value is, the more false positive loops are presented in the result.
Value
a GRanges object with regions corresponding to the inferred looped region given the provided hybridized region.
ZhenWei10/m6ALogisticModel documentation built on May 17, 2019, 10:11 p.m.
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Description Usage Arguments Value
Description
infer_loop is used to extract the roughly accurate looped regions beween closed hybridized pairs given regions of hybridization.
Usage
1 | infer_loop(struc_sterm, length_cut_off = 30)
|
Arguments
struc_sterm |
a |
length_cut_off |
the allowed maximum pairing distance between 2 hybridized regions, the default setting is 30. Due to the crude algorithm defined by this function, The higher this value is, the more false positive loops are presented in the result. |
Value
a GRanges object with regions corresponding to the inferred looped region given the provided hybridized region.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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