Description Usage Arguments See Also Examples
RNAfold
is used to submit the RNAfold command in ViennaRNA package into multiple bach jobs.
This function is only useful when you have the qsub command and the ViennaRNA package installed on your linux system.
Other wise, please run RNAfold individually on your terminal based on the fasta files extracted by
tx_seq_extraction
.
You can use Single_RNAfold
to get the code of your RNAfold command.
1 | RNAfold(Group_nums = 1:30, size = "Small", OutPutNames = "Foo")
|
Group_nums |
This value corresponds to the |
size |
The group name for the transcripts. Can be one of the "Small", "Middle", and "Large". |
OutPutNames |
The output names of the RNAfold. |
tx_seq_extraction
, Single_RNAfold
, and rfold_assembly_tx
1 2 3 4 5 | ## Not run:
tx_seq_extraction(MMusculus,txdb,getwd())
RNAfold(1:30,"Small","gsmall")
## End(Not run)
|
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