RNAfold: Parallel computation of RNAfold

Description Usage Arguments See Also Examples

View source: R/RNAfold.R

Description

RNAfold is used to submit the RNAfold command in ViennaRNA package into multiple bach jobs. This function is only useful when you have the qsub command and the ViennaRNA package installed on your linux system.

Other wise, please run RNAfold individually on your terminal based on the fasta files extracted by tx_seq_extraction. You can use Single_RNAfold to get the code of your RNAfold command.

Usage

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RNAfold(Group_nums = 1:30, size = "Small", OutPutNames = "Foo")

Arguments

Group_nums

This value corresponds to the divide_num argument of the tx_seq_extraction.

size

The group name for the transcripts. Can be one of the "Small", "Middle", and "Large".

OutPutNames

The output names of the RNAfold.

See Also

tx_seq_extraction, Single_RNAfold, and rfold_assembly_tx

Examples

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## Not run:  
tx_seq_extraction(MMusculus,txdb,getwd()) 
RNAfold(1:30,"Small","gsmall") 

## End(Not run)

ZhenWei10/rBS2ndStructure documentation built on Dec. 26, 2019, 3:37 a.m.