Description Usage Arguments Value See Also Examples
View source: R/Single_RNAfold.R
RNAfold is a RNA secondary structure prediction software in ViennaRNA package. This R function is used to generate the single bash command of RNAfold, which is used to predict the MEA RNA secondary structures of the full length transcripts.
1 | Single_RNAfold(Group_num, Size = "Small", outPutNames = "Foo")
|
Group_num |
The number of the group of the fasta file.
This value corresponds to the |
Size |
The size of the transcript. Can be one of the "Small", "Middle", and "Large". |
outPutNames |
The name of the output files of RNA fold. |
This function will return the code of RNAfold that can directly run in the terminal.
tx_seq_extraction
, RNAfold
, and rfold_assembly_tx
1 | cat(Single_RNAfold(1,"Small","gsmall"))
|
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