Single_RNAfold: Generate the bash command of RNAfold

In ZhenWei10/rBS2ndStructure: Filter the thermal stable RNA secondary structure

Description

RNAfold is a RNA secondary structure prediction software in ViennaRNA package. This R function is used to generate the single bash command of RNAfold, which is used to predict the MEA RNA secondary structures of the full length transcripts.

Usage

Single_RNAfold(Group_num, Size = "Small", outPutNames = "Foo")

Arguments

Group_num	The number of the group of the fasta file. This value corresponds to the divide_num argument of the tx_seq_extraction.
Size	The size of the transcript. Can be one of the "Small", "Middle", and "Large".
outPutNames	The name of the output files of RNA fold.

Value

This function will return the code of RNAfold that can directly run in the terminal.

See Also

tx_seq_extraction, RNAfold, and rfold_assembly_tx

Examples

cat(Single_RNAfold(1,"Small","gsmall"))

ZhenWei10/rBS2ndStructure documentation built on Dec. 26, 2019, 3:37 a.m.