API for ZhenxingGuo0015/TRESS
Toolbox for mRNA epigenetics sequencing analysis

Global functions
Basal Man page
BgMethylevel Source code
CallCandidates Man page Source code
CallDMRs.paramEsti Man page Source code
CallPeaks.multiRep Man page Source code
CallPeaks.oneRep Man page Source code
CallPeaks.paramEsti Man page Source code
ChisqTest Source code
CoefName Man page Source code
CovR.parallel Source code
DMRInfer Man page Source code
DMR_M3vsWT Man page
DMR_SixWeekvsTwoWeek Man page
DivideBins Man page Source code
E.Hessian.NB Source code
E.d2L.R2 Source code
E.d2L.Rphi Source code
E.d2L.Rtheta Source code
E.d2L.phi2 Source code
E.d2L.phitheta Source code
E.d2L.theta2 Source code
EstiMu Source code
EstiPhi Source code
EstiPhi.IterativeUpdate Source code
EstiPhi.JointUpdate Source code
EstiPhi.SingleUpdate Source code
EstiVarofMu Source code
Fisher.R Source code
Grad.NB Source code
Hessian.NB Source code
JProfileMLE.phitheta Source code
MLE.parallel Source code
PostPhi.NBlogN Source code
Posterior.phi Source code
ShowOnePeak Man page Source code
TRESS_DMRfit Man page Source code
TRESS_DMRtest Man page Source code
TRESS_peak Man page Source code
Uniroot.truncNsd Source code
WaldTest Source code
adjustHessian Source code
d.d2L_R2.phi Source code
d.d2L_R2.theta Source code
d2L.R2 Source code
d2L.Rphi Source code
d2L.Rtheta Source code
d2L.phi2 Source code
d2L.phitheta Source code
d2L.theta2 Source code
d2muj.R2 Source code
dL.R Source code
dL.phi Source code
dL.theta Source code
defineStrand Source code
dmu.R Source code
dmuj.R Source code
esti.nullsd.lphi Source code
exonBins.byTXDB Source code
filterRegions Man page Source code
findBumps Man page Source code
findRegion Source code
getInfer Source code
getLogFC Source code
getPeakCounts Source code
getStrand Source code
getWinCounts Source code
iCovR Source code
iMLE Source code
log.lik_NB Source code
meRatio Man page Source code
mix.2norm.onlysd Source code
mySmooth Source code
mylogit Source code
mysolve Source code
profileMLE.coef Source code
profileMLE.phi Source code
profileMLE.theta Source code
read.BAM Source code
ZhenxingGuo0015/TRESS documentation built on April 14, 2023, 4:21 p.m.