DMR_M3vsWT: Transcriptome location and read counts of 200 candidate DMRs,...
In ZhenxingGuo0015/TRESS: Toolbox for mRNA epigenetics sequencing analysis
DMR_M3vsWT R Documentation
Transcriptome location and read counts of 200 candidate DMRs,
and size factors.
Description
A dataset containing the transcriptome location,
read counts of 200 candidate DMRs from 4 samples.
Each sample contains two paired of IP and input replicates.
It also contains size factors estimated from the whole
transcriptome to normalize sequencing depth of each sample.
In addition, a small proportion of transcriptome bins and
their read counts are also included for the purpose of
visualizing individual DMR.
Usage
data(DMR_M3vsWT)
Format
A list with 5 elements
- Regions
A dataframe of 200 obs and 5 variables,
containing the transcriptome location of each candidate
DMR.
- Counts
A dataframe of 200 obs and 8 variables,
caontaining the read counts for candidate DMRs.
The counts are from both Wild type and METTL3-Knockout
samples. Each has two paired of IP and input replicates.
- sf
A numerical vector,
containing the size factors of each sample
estimated from the whole transcriptome
- Bins
A dataframe of 737 obs and 5 variables,
containing the transcriptome location of bins
overlapping with a small subset of 200 candidate DMRs.
- BinsCounts
Read counts (200-by-8) correspond to "Bins".
...
ZhenxingGuo0015/TRESS documentation built on April 14, 2023, 4:21 p.m.
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| DMR_M3vsWT | R Documentation |
Transcriptome location and read counts of 200 candidate DMRs, and size factors.
Description
A dataset containing the transcriptome location, read counts of 200 candidate DMRs from 4 samples. Each sample contains two paired of IP and input replicates. It also contains size factors estimated from the whole transcriptome to normalize sequencing depth of each sample. In addition, a small proportion of transcriptome bins and their read counts are also included for the purpose of visualizing individual DMR.
Usage
data(DMR_M3vsWT)
Format
A list with 5 elements
- Regions
A dataframe of 200 obs and 5 variables, containing the transcriptome location of each candidate DMR.
- Counts
A dataframe of 200 obs and 8 variables, caontaining the read counts for candidate DMRs. The counts are from both Wild type and METTL3-Knockout samples. Each has two paired of IP and input replicates.
- sf
A numerical vector, containing the size factors of each sample estimated from the whole transcriptome
- Bins
A dataframe of 737 obs and 5 variables, containing the transcriptome location of bins overlapping with a small subset of 200 candidate DMRs.
- BinsCounts
Read counts (200-by-8) correspond to "Bins".
...
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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