DMR_SixWeekvsTwoWeek: Transcriptome location and read counts of 200 candidate DMRs.

DMR_SixWeekvsTwoWeekR Documentation

Transcriptome location and read counts of 200 candidate DMRs.

Description

A data list which consists of the transcriptome location and read counts of 200 candidate DMRs from 8 mouse brain samples. Each sample has two paired IP and input replicates. It also contains the size factor of each sample and the estimated methylation ratio in each sample for 200 canidate DMRs.

Usage

data(DMR_SixWeekvsTwoWeek)

Format

A list with 4 elements

Regions

A dataframe of 200 obs and 5 variables, containing the transcriptome location for 200 candidate DMRs from two mouse brain regions at two time points.

Counts

A dataframe of 200 obs and 16 variables, caontaining candidate DMR read counts in each paired IP and input replicate of all 8 samples.

sf

A numerical vector, containing the size factors of all samples estimated from the whole transcriptome

MeRatio

A data matrix of 200-by-8, containing the estimated methylation ratio for each sample.

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ZhenxingGuo0015/TRESS documentation built on April 14, 2023, 4:21 p.m.