context("fastLasso - highdimensional regression")
## load packages
library("lars", quietly=TRUE)
library("robustHD", quietly=TRUE)
## set seed for reproducibility
set.seed(1234)
## generate data for tests
n <- 20 # number of observations
p <- 50 # number of predictors
beta <- rep.int(c(1, 0), c(5, p-5)) # true coefficients
x <- replicate(p, rnorm(n)) # predictor matrix
y <- c(x %*% beta + rnorm(n)) # response
## run tests
test_that("different values for lambda yield correct solution", {
## fit lasso with lars() as reference solution
fitLars <- lars(x, y, type="lasso")
## extract values of lambda according to parametrization in robustHD
lambda <- 2 * fitLars$lambda / n
sMax <- length(lambda)
## choose different values of lambda and check solutions
lambda <- c(lambda[1] * 1.5,
sort.int(union(lambda, (lambda[-sMax] + lambda[-1]) / 2),
decreasing=TRUE),
lambda[sMax] * 0.5, 0.00001, 0)
## extract coefficients from solution computed via lars()
coefLars <- sapply(n*lambda/2, function(l) {
beta <- coef(fitLars, s=l, mode="lambda")
alpha <- fitLars$mu - sum(beta * fitLars$meanx)
c(alpha, beta)
})
## fit models with fastLasso() and extract coefficients
coefFastLasso <- sapply(lambda, function(l) {
fitFastLasso <- robustHD:::fastLasso(x, y, lambda=l)
coef(fitFastLasso)
})
## test whether coefficients are equal
expect_equal(coefLars, coefFastLasso)
})
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