sir.adm: Pneumonia on admission in intenive care unit patients

In aallignol/mvna: Nelson-Aalen estimator of the cumulative hazard in multistate models

Description

Pneumonia status on admission for intensive care unit (ICU) patients, a random sample from the SIR-3 study.

Usage

data(sir.adm)

Format

The data contains 747 rows and 4 variables:

id:

Randomly generated patient id

pneu:

Pneumonia indicator. 0: No pneumonia, 1: Pneumonia

status

Status indicator. 0: censored observation, 1: discharged, 2: dead

time:

Follow-up time in day

age:

Age at inclusion

sex:

Sex. F for female and M for male

Source

Beyersmann, J., Gastmeier, P., Grundmann, H., Baerwolff, S., Geffers, C., Behnke, M., Rueden, H., and Schumacher, M. Use of multistate models to assess prolongation of intensive care unit stay due to nosocomial infection. Infection Control and Hospital Epidemiology, 27:493-499, 2006.

Examples

# data set transformation
data(sir.adm) 
id <- sir.adm$id
from <- sir.adm$pneu
to <- ifelse(sir.adm$status==0,"cens",sir.adm$status+1)
times <- sir.adm$time
dat.sir <- data.frame(id,from,to,time=times)

# Possible transitions
tra <- matrix(ncol=4,nrow=4,FALSE)
tra[1:2,3:4] <- TRUE

na.pneu <- mvna(dat.sir,c("0","1","2","3"),
                tra,"cens")

if(require("lattice")) {
xyplot(na.pneu,tr.choice=c("0 2","1 2","0 3","1 3"),
       aspect=1,strip=strip.custom(bg="white",
       factor.levels=c("No pneumonia on admission -- Discharge",
                       "Pneumonia on admission -- Discharge",
                       "No pneumonia on admission -- Death",
                       "Pneumonia on admission -- Death"),
       par.strip.text=list(cex=0.9)),
       scales=list(alternating=1),xlab="Days",
       ylab="Nelson-Aalen esimates")
}

aallignol/mvna documentation built on May 10, 2019, 3:13 a.m.