Man pages for aaronwolen/bingd
Bayesian integration of genomic data
| AnnotatedGWAS-class | AnnotatedGWAS-class |
| annotate.gwas | Annotate GWAS makers with genomic features |
| as.GWAS | Create a GWAS object |
| bingd | bingd: bayesian integration of genomic data |
| cache.features | Download uncached AnnotationHub features |
| calc.bayes | Calculate posterior probability of being an effective SNP |
| calc.conditionals | Calculate conditional probabilities for annotated features |
| calc.enrich | Calculate enrichment of features across thresholds |
| calc.priors | Calculate prior probability of being a risk SNP |
| calc.threshold | Calculate p-value threshold for identifying risk SNPs |
| calc.z | Convert p-values to z-scores |
| consolidate | Consolidate each group of annotated features |
| fcols | Extract features from AnnotatedGWAS object |
| featureIndex | Access AnnotatedGWAS feature index |
| feature.labels | Create pretty feature labels from the full RDataPaths |
| FeatureList | FeatureList objects |
| featureOverlaps | Find features overlapping GWAS markers |
| features | Extract list of features from AnnotatedGWAS object |
| filter.features | Filter FeatureList object based on search terms |
| findOverlaps | Find features overlapping GWAS markers |
| GWAS-class | GWAS-class |
| hub.features | Retrieve information about AnnotationHub features |
| load.feature | Load a local GRanges feature |
| local.features | Retrieve information about local features |
| serial.enrich | Calculate the enrichment of a particular discrete feature... |
