AnnotatedGWAS-class | AnnotatedGWAS-class |
annotate.gwas | Annotate GWAS makers with genomic features |
as.GWAS | Create a GWAS object |
bingd | bingd: bayesian integration of genomic data |
cache.features | Download uncached AnnotationHub features |
calc.bayes | Calculate posterior probability of being an effective SNP |
calc.conditionals | Calculate conditional probabilities for annotated features |
calc.enrich | Calculate enrichment of features across thresholds |
calc.priors | Calculate prior probability of being a risk SNP |
calc.threshold | Calculate p-value threshold for identifying risk SNPs |
calc.z | Convert p-values to z-scores |
consolidate | Consolidate each group of annotated features |
fcols | Extract features from AnnotatedGWAS object |
featureIndex | Access AnnotatedGWAS feature index |
feature.labels | Create pretty feature labels from the full RDataPaths |
FeatureList | FeatureList objects |
featureOverlaps | Find features overlapping GWAS markers |
features | Extract list of features from AnnotatedGWAS object |
filter.features | Filter FeatureList object based on search terms |
findOverlaps | Find features overlapping GWAS markers |
GWAS-class | GWAS-class |
hub.features | Retrieve information about AnnotationHub features |
load.feature | Load a local GRanges feature |
local.features | Retrieve information about local features |
serial.enrich | Calculate the enrichment of a particular discrete feature... |
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