profile_dotplot: Dotplot of sample feature profiles

In aaronwolen/metafiler: metagenomic profile plots

Dotplot of sample feature profiles

Description

Dot size is determined by mapping point area to feature values. Dots can be color coded by sample (color = "sample"), by feature (color = "feature") or any associated metadatda variable.

Usage

profile_dotplot(data, color = NULL, palette, legend = TRUE, top.n = NULL,
  other.color = "grey50", max.size = 6, title.area, title.color)

Arguments

data	ExpressionSet object.
color	color code dots by sample, feature or any of the associated metadata variables.
palette	a function that generates n colors.
legend	include a legend?
top.n	Limit the number of levels in the new grouping variable to the top.n most prevalent. Samples not among the most prevalent groups are assigned to "Othere".
other.color	Color applied to features not among the top.n.
max.size	Size of largest dots.
title.area	Title of point area legend.
title.color	Title of point color legend.

Examples

profile_dotplot(profiles)

aaronwolen/metafiler documentation built on Feb. 16, 2024, 12:41 a.m.