Description Usage Format Source References See Also
Summary statistics for the major depressive disorder (mdd) subset of PGC's cross disorder analysis.
1 |
A data frame with 11 variables:
snpid
SNP rs identifier
hg18chr
hg18 chromosome (1-22)
bp
hg18 base position of SNP
a1
reference allele (not necessarily minor allele)
a2
alternate allele
or
odds ratio from the logistic regression including PCA covariates
se
standard error of the odds ratio
pval
asymptotic p-value
info
INFO score from imputation, ratio of variances can exceed 1
ngt
number of studies in which this SNP is directly genotyped (not imputed)
CEUaf
frequency of 'a1' in HapMap3 CEU (HapMap2 for BIP)
https://www.med.unc.edu/pgc/results-and-downloads
Major Depressive Disorder Working Group of the PGC, A mega-analysis of genome-wide association studies for major depressive disorder. Molecular Psychiatry. (2013). DOI: 10.1038/mp.2012.21.
Other PGC datasets: adhd
, aut
,
bip
, scz
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.