Man pages for ababaian/RRNAframework
R interface for RNAframework
| coverageSummary | Reads a mod.df object created by 'readModDir' with ucov/tcov. |
| covrunSummary | Reads a mod.df object created by 'readModDir' with ucov/tcov... |
| fiveSigma | Mean +/- 5*sd of a numerical vector |
| getORF | Wrapper function for EMBOSS 'getorf' program |
| intersectNT | Find overlap between two modNT.df objects |
| modToFa | Write a Fasta file for each flank.seq in a... |
| plotReps | Plot Score vs. Score of two mod.df object Will also draw... |
| plotScore | Scatter plot of Score vs. Ratio for each nt in mod.df |
| plotScoreRatio_Bar | Plot box-plot for Score/Ratio of each nt in mod.df |
| readModDir | Reads a directory of rf-modcall XML files wrapper for... |
| readModXML | Reads a rf-modcall XML files |
| readPeakBed | Reads an output bed files from "rf-peakcall" |
| sigMod | Reads a mod.df object created by 'readModDir' |
