readModXML: Reads a rf-modcall XML files

In ababaian/RRNAframework: R interface for RNAframework

Description

Reads a rf-modcall XML files

Usage

readModXML(file, na.asZero = T, include.cov = T)

Arguments

file	XML file to read
na.asZero	Convert NA in rf-modcall (score and ratio) to zreo. Default: T
include.cov	Return ucov, tcov if it exists in XML file. (use rf-modcall_2 script)

Value

List object for each transcript containing scores/sequence for Transcript

See Also

readModDir Wraps thus function across an entire directory

Examples

readModXML(file = 'rf-mod.experiment/PTEN.xml')

ababaian/RRNAframework documentation built on March 18, 2020, 1:29 a.m.