modToFa: Write a Fasta file for each flank.seq in a...
In ababaian/RRNAframework: R interface for RNAframework

Description Usage Arguments Value Examples

Write a Fasta file for each flank.seq in a nucleotide.modification data.frame

1	modToFa(file, modNT.df, overwrite = T)

`file`	fasta file to write to
`modNT.df`	nucleotide.modification data.frame (either significant or control)
`overwrite`	if file exists, delete it and overwrite. Else append to file. Default = T

NULL writes to file

modToFa('RTstop.motif.fa', RTstop.wt1)
# Create a background set x100 for motif analysis by HOMER

for (N in 1:100){
rand.modNT.N <- sigMod( RTstop.wt1, method = "fiveSigma", flank.seq = 5, randomize = T)
  modToFa( 'BG.motif.fa', rand.modNT.N, overwrite = F)
}