coverageSummary: Reads a mod.df object created by 'readModDir' with ucov/tcov.
In ababaian/RRNAframework: R interface for RNAframework
Description
Usage
Arguments
Value
Examples
Description
Reads a mod.df object created by readModDir with ucov/tcov.
Usage
1
coverageSummary(mod.row, method)
Arguments
method
How is 'coverage' summarized. "mean", "median", "max", "q95". Default: ‘mean’
mod.df
A modification data.frame object
set.na
In log2FC field, coverts all NA and NaN values to <VALUE> [FALSE]. Set to FALSE to leave unchanged.
set.inf
In log2FC field, coverts all Inf or -Inf values to <VALUE> [FALSE]. Set to FALSE to leave unchanged
Value
A data.frame of <Gene>, <uCov_summary>, <tCov_summary>
Examples
1
2
geneCov.wt <- geneCoverage( mod.df.wt1, method = "mean")
geneCov.ko <- geneCoverage( mod.df.ko1, method = "mean")
ababaian/RRNAframework documentation built on March 18, 2020, 1:29 a.m.
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Description Usage Arguments Value Examples
Description
Reads a mod.df object created by readModDir with ucov/tcov.
Usage
1 | coverageSummary(mod.row, method)
|
Arguments
method |
How is 'coverage' summarized. "mean", "median", "max", "q95". Default: ‘mean’ |
mod.df |
A modification data.frame object |
set.na |
In log2FC field, coverts all NA and NaN values to <VALUE> [FALSE]. Set to FALSE to leave unchanged. |
set.inf |
In log2FC field, coverts all Inf or -Inf values to <VALUE> [FALSE]. Set to FALSE to leave unchanged |
Value
A data.frame of <Gene>, <uCov_summary>, <tCov_summary>
Examples
1 2 | geneCov.wt <- geneCoverage( mod.df.wt1, method = "mean")
geneCov.ko <- geneCoverage( mod.df.ko1, method = "mean")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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