group: group from Bioconductor workflow RNAseq123

In abbvie-external/OmicNavigator: Open-Source Software for 'Omic' Data Analysis and Visualization

group from Bioconductor workflow RNAseq123

Description

A subset of the object group from Bioconductor workflow RNAseq123.

Usage

group

Format

A factor with 3 levels:

Basal

Basal cells

LP

Luminal progenitor cells

ML

Mature luminal cells

Source

https://bioconductor.org/packages/release/workflows/vignettes/RNAseq123/inst/doc/limmaWorkflow.html

References

Law CW, Alhamdoosh M, Su S, Dong X, Tian L, Smyth GK, Ritchie ME. RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR version 3; peer review: 3 approved. F1000Research 2018, 5:1408 \Sexpr[results=rd]{tools:::Rd_expr_doi("10.12688/f1000research.9005.3")}

Sheridan, J.M., Ritchie, M.E., Best, S.A. et al. A pooled shRNA screen for regulators of primary mammary stem and progenitor cells identifies roles for Asap1 and Prox1. BMC Cancer 2015, 15:221 \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1186/s12885-015-1187-z")}

Examples

  table(group)
  str(group)

abbvie-external/OmicNavigator documentation built on April 12, 2025, 12:07 a.m.