getTopresults: Get Top Results

In abhik1368/netpredictor: Algorithms to search for missing link in a graph.

Description

The function returns the given top number of predicted results along with true interactions.

Usage

getTopresults(A, P, top = 10, druglist = NULL)

Arguments

A	Drug target association matrix.
P	Drug target predicted matrix.
top	top number of predicted targets.
druglist	It accepts a vector of drugnames for which results will return

Details

Get top predicted results.

Value

it returns a list of aucc,auc, bedorc,enrichment factor and auc (top 10

Examples

data(Enzyme)
A = enzyme_ADJ
S1 = enzyme_Gsim
S2= enzyme_Csim
## Running the netcombo algorithm.
P <- netCombo(g1,s1=S1,s2=S2,nbi.alpha=0.5,nbi.lamda=0.5,par=TRUE)
result = getTopresults(A,P,top=10,druglist=NULL)
## Getting result from a drug list.
drugs = c("D00014","D00018", "D00029", "D00036","D00045","D00049")
result = getTopresults(A,P,top=10,druglist=drugs)

abhik1368/netpredictor documentation built on May 10, 2019, 4:09 a.m.