Files in acidgenomics/AcidGenomes

Acid Genomics Genome Annotations

NEWS.md R/AllClasses.R R/AllGenerics.R R/AllGlobals.R R/EnsemblGenes.R R/EnsemblToNcbi-methods.R R/GeneToSymbol-methods.R R/Hgnc.R R/JaxHumanToMouse.R R/Mgi.R R/NcbiGeneHistory.R R/NcbiGeneInfo.R R/NcbiToEnsembl-methods.R R/TxToGene-methods.R R/currentGenomeBuild.R R/currentGenomeVersion.R R/detectOrganism.R R/downloadEnsemblGenome.R R/downloadGencodeGenome.R R/downloadRefseqGenome.R R/downloadUcscGenome.R R/emptyRanges.R R/export-methods.R R/gencodeReleaseHistory.R R/importTxToGene.R R/internal-annotationhub.R R/internal-biocfilecache.R R/internal-checksums.R R/internal-ensembl.R R/internal-ensembldb.R R/internal-genomeinfodb.R R/internal-genomicfeatures.R R/internal-genomicranges.R R/internal-gff.R R/internal-miscellaneous.R R/internal-ncbi.R R/internal-rtracklayer.R R/makeEnsDbFromGff.R R/makeGRangesFromEnsembl.R R/makeGRangesFromGff.R R/makeGeneToSymbol.R R/makeProteinToGene.R R/makeTxToGene.R R/makeTxToGeneFromFasta.R R/mapEnsemblReleaseToUrl.R R/mapGencodeToEnsembl.R R/mapGeneNamesToEnsembl.R R/mapGeneNamesToHgnc.R R/mapGeneNamesToNcbi.R R/mapHumanOrthologs.R R/organism-methods.R R/package.R R/params.R R/show-methods.R R/stripGeneVersions-methods.R R/stripTranscriptVersions-methods.R R/summary-methods.R R/updateObject-methods.R README.md data-raw/detectOrganism.R data-raw/mapNcbiTaxId.R data-raw/sysdata.R longtests/testthat.R longtests/testthat/helper-globals.R longtests/testthat/test-JaxHumanToMouse.R longtests/testthat/test-NcbiGeneHistory.R longtests/testthat/test-downloadEnsemblGenome.R longtests/testthat/test-downloadGencodeGenome.R longtests/testthat/test-downloadRefseqGenome.R longtests/testthat/test-downloadUcscGenome.R longtests/testthat/test-makeGRangesFromGff.R longtests/testthat/test-makeTxToGeneFromFasta.R longtests/testthat/test-mapEnsemblReleaseToUrl.R longtests/testthat/test-mapHumanOrthologs.R man/AcidGenomes-package.Rd man/AcidGenomesTestsUrl.Rd man/EnsemblGenes-class.Rd man/EnsemblGenes.Rd man/EnsemblToNcbi-class.Rd man/EnsemblToNcbi.Rd man/EnsemblTranscripts-class.Rd man/FlybaseGenes-class.Rd man/FlybaseTranscripts-class.Rd man/GencodeGenes-class.Rd man/GencodeTranscripts-class.Rd man/GeneToSymbol-class.Rd man/GeneToSymbol.Rd man/Hgnc-class.Rd man/Hgnc.Rd man/JaxHumanToMouse-class.Rd man/JaxHumanToMouse.Rd man/Mgi-class.Rd man/Mgi.Rd man/NcbiGeneHistory-class.Rd man/NcbiGeneHistory.Rd man/NcbiGeneInfo-class.Rd man/NcbiGeneInfo.Rd man/NcbiToEnsembl-class.Rd man/NcbiToEnsembl.Rd man/ProteinToGene-class.Rd man/RefseqGenes-class.Rd man/RefseqTranscripts-class.Rd man/TxToGene-class.Rd man/TxToGene.Rd man/UcscGenes-class.Rd man/UcscTranscripts-class.Rd man/WormbaseGenes-class.Rd man/WormbaseTranscripts-class.Rd man/currentGenomeBuild.Rd man/currentGenomeVersion.Rd man/detectOrganism.Rd man/downloadEnsemblGenome.Rd man/downloadGencodeGenome.Rd man/downloadRefseqGenome.Rd man/downloadUcscGenome.Rd man/emptyRanges.Rd man/export.Rd man/gencodeReleaseHistory.Rd man/importTxToGene.Rd man/makeEnsDbFromGff.Rd man/makeGRangesFromEnsembl.Rd man/makeGRangesFromGff.Rd man/makeGeneToSymbol.Rd man/makeProteinToGene.Rd man/makeTxToGene.Rd man/makeTxToGeneFromFasta.Rd man/mapEnsemblReleaseToUrl.Rd man/mapGencodeToEnsembl.Rd man/mapGeneNamesToEnsembl.Rd man/mapGeneNamesToHgnc.Rd man/mapGeneNamesToNcbi.Rd man/mapHumanOrthologs.Rd man/organism.Rd man/params.Rd man/show.Rd man/stripGeneVersions.Rd man/stripTranscriptVersions.Rd man/summary.Rd man/updateObject.Rd tests/testthat.R tests/testthat/helper-cache.R tests/testthat/helper-globals.R tests/testthat/test-EnsemblToNcbi.R tests/testthat/test-GeneToSymbol.R tests/testthat/test-Hgnc.R tests/testthat/test-Mgi.R tests/testthat/test-NcbiGeneInfo.R tests/testthat/test-NcbiToEnsembl.R tests/testthat/test-TxToGene.R tests/testthat/test-detectOrganism.R tests/testthat/test-emptyRanges.R tests/testthat/test-export.R tests/testthat/test-gencodeReleaseHistory.R tests/testthat/test-importTxToGene.R tests/testthat/test-makeGRangesFromEnsDb.R tests/testthat/test-makeGRangesFromEnsembl.R tests/testthat/test-makeGeneToSymbol.R tests/testthat/test-makeTxToGeneFromEnsDb.R tests/testthat/test-mapGencodeToEnsembl.R tests/testthat/test-mapGenesToEnsembl.R tests/testthat/test-mapGenesToHgnc.R tests/testthat/test-mapGenesToNcbi.R tests/testthat/test-organism.R