currentGenomeBuild: Current genome build

Description Usage Arguments Value Note See Also Examples

Description

Fetch the current genome build (assembly) version from online resources.

Usage

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Arguments

organism

character(1). Full Latin organism name (e.g. "Homo sapiens").

taxonomicGroup

character(1). Only applies to RefSeq. FTP server taxonomic group subdirectory path (e.g. "vertebrate_mammalian"). Defining this manually avoids having to query the FTP server.

Value

character(1). Genome assembly build version.

Note

Updated 2021-07-27.

See Also

Examples

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## Ensembl.
currentEnsemblGenomeBuild("Homo sapiens")
currentEnsemblGenomeBuild("Mus musculus")

## GENCODE.
currentGencodeGenomeBuild("Homo sapiens")
currentGencodeGenomeBuild("Mus musculus")

## RefSeq.
currentRefSeqGenomeBuild(
    organism = "Homo sapiens",
    taxonomicGroup = "vertebrate_mammalian"
)
currentRefSeqGenomeBuild(
    organism = "Mus musculus",
    taxonomicGroup = "vertebrate_mammalian"
)

## UCSC.
currentUCSCGenomeBuild("Homo sapiens")
currentUCSCGenomeBuild("Mus musculus")

acidgenomics/AcidGenomes documentation built on Sept. 16, 2021, 7:30 p.m.