Files in acidgenomics/AcidGenomes
Acid Genomics Genome Annotations
.Rbuildignore
.gitignore
.lintr
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/AllClasses.R
R/AllGenerics.R
R/AllGlobals.R
R/EnsemblGenes.R
R/EnsemblToNcbi-methods.R
R/GeneToSymbol-methods.R
R/Hgnc.R
R/JaxHumanToMouse.R
R/Mgi.R
R/NcbiGeneHistory.R
R/NcbiGeneInfo.R
R/NcbiToEnsembl-methods.R
R/TxToGene-methods.R
R/currentGenomeBuild.R
R/currentGenomeVersion.R
R/detectOrganism.R
R/downloadEnsemblGenome.R
R/downloadGencodeGenome.R
R/downloadRefseqGenome.R
R/downloadUcscGenome.R
R/emptyRanges.R
R/export-methods.R
R/gencodeReleaseHistory.R
R/importTxToGene.R
R/internal-annotationhub.R
R/internal-biocfilecache.R
R/internal-checksums.R
R/internal-ensembl.R
R/internal-ensembldb.R
R/internal-genomeinfodb.R
R/internal-genomicfeatures.R
R/internal-genomicranges.R
R/internal-gff.R
R/internal-miscellaneous.R
R/internal-ncbi.R
R/internal-rtracklayer.R
R/makeEnsDbFromGff.R
R/makeGRangesFromEnsembl.R
R/makeGRangesFromGff.R
R/makeGeneToSymbol.R
R/makeProteinToGene.R
R/makeTxToGene.R
R/makeTxToGeneFromFasta.R
R/mapEnsemblReleaseToUrl.R
R/mapGencodeToEnsembl.R
R/mapGeneNamesToEnsembl.R
R/mapGeneNamesToHgnc.R
R/mapGeneNamesToNcbi.R
R/mapHumanOrthologs.R
R/organism-methods.R
R/package.R
R/params.R
R/show-methods.R
R/stripGeneVersions-methods.R
R/stripTranscriptVersions-methods.R
R/summary-methods.R
R/sysdata.rda
R/updateObject-methods.R
README.md
_pkgdown.yml
data-raw/detectOrganism.R
data-raw/detectOrganism.csv
data-raw/detectOrganism.rds
data-raw/mapNcbiTaxId.R
data-raw/mapNcbiTaxId.csv
data-raw/mapNcbiTaxId.rds
data-raw/sysdata.R
longtests/testthat.R
longtests/testthat/helper-globals.R
longtests/testthat/test-JaxHumanToMouse.R
longtests/testthat/test-NcbiGeneHistory.R
longtests/testthat/test-downloadEnsemblGenome.R
longtests/testthat/test-downloadGencodeGenome.R
longtests/testthat/test-downloadRefseqGenome.R
longtests/testthat/test-downloadUcscGenome.R
longtests/testthat/test-makeGRangesFromGff.R
longtests/testthat/test-makeTxToGeneFromFasta.R
longtests/testthat/test-mapEnsemblReleaseToUrl.R
longtests/testthat/test-mapHumanOrthologs.R
man/AcidGenomes-package.Rd
man/AcidGenomesTestsUrl.Rd
man/EnsemblGenes-class.Rd
man/EnsemblGenes.Rd
man/EnsemblToNcbi-class.Rd
man/EnsemblToNcbi.Rd
man/EnsemblTranscripts-class.Rd
man/FlybaseGenes-class.Rd
man/FlybaseTranscripts-class.Rd
man/GencodeGenes-class.Rd
man/GencodeTranscripts-class.Rd
man/GeneToSymbol-class.Rd
man/GeneToSymbol.Rd
man/Hgnc-class.Rd
man/Hgnc.Rd
man/JaxHumanToMouse-class.Rd
man/JaxHumanToMouse.Rd
man/Mgi-class.Rd
man/Mgi.Rd
man/NcbiGeneHistory-class.Rd
man/NcbiGeneHistory.Rd
man/NcbiGeneInfo-class.Rd
man/NcbiGeneInfo.Rd
man/NcbiToEnsembl-class.Rd
man/NcbiToEnsembl.Rd
man/ProteinToGene-class.Rd
man/RefseqGenes-class.Rd
man/RefseqTranscripts-class.Rd
man/TxToGene-class.Rd
man/TxToGene.Rd
man/UcscGenes-class.Rd
man/UcscTranscripts-class.Rd
man/WormbaseGenes-class.Rd
man/WormbaseTranscripts-class.Rd
man/currentGenomeBuild.Rd
man/currentGenomeVersion.Rd
man/detectOrganism.Rd
man/downloadEnsemblGenome.Rd
man/downloadGencodeGenome.Rd
man/downloadRefseqGenome.Rd
man/downloadUcscGenome.Rd
man/emptyRanges.Rd
man/export.Rd
man/gencodeReleaseHistory.Rd
man/importTxToGene.Rd
man/makeEnsDbFromGff.Rd
man/makeGRangesFromEnsembl.Rd
man/makeGRangesFromGff.Rd
man/makeGeneToSymbol.Rd
man/makeProteinToGene.Rd
man/makeTxToGene.Rd
man/makeTxToGeneFromFasta.Rd
man/mapEnsemblReleaseToUrl.Rd
man/mapGencodeToEnsembl.Rd
man/mapGeneNamesToEnsembl.Rd
man/mapGeneNamesToHgnc.Rd
man/mapGeneNamesToNcbi.Rd
man/mapHumanOrthologs.Rd
man/organism.Rd
man/params.Rd
man/show.Rd
man/stripGeneVersions.Rd
man/stripTranscriptVersions.Rd
man/summary.Rd
man/updateObject.Rd
package.Rproj
pkgdown/extra.css
tests/testthat.R
tests/testthat/.gitignore
tests/testthat/helper-cache.R
tests/testthat/helper-globals.R
tests/testthat/test-EnsemblToNcbi.R
tests/testthat/test-GeneToSymbol.R
tests/testthat/test-Hgnc.R
tests/testthat/test-Mgi.R
tests/testthat/test-NcbiGeneInfo.R
tests/testthat/test-NcbiToEnsembl.R
tests/testthat/test-TxToGene.R
tests/testthat/test-detectOrganism.R
tests/testthat/test-emptyRanges.R
tests/testthat/test-export.R
tests/testthat/test-gencodeReleaseHistory.R
tests/testthat/test-importTxToGene.R
tests/testthat/test-makeGRangesFromEnsDb.R
tests/testthat/test-makeGRangesFromEnsembl.R
tests/testthat/test-makeGeneToSymbol.R
tests/testthat/test-makeTxToGeneFromEnsDb.R
tests/testthat/test-mapGencodeToEnsembl.R
tests/testthat/test-mapGenesToEnsembl.R
tests/testthat/test-mapGenesToHgnc.R
tests/testthat/test-mapGenesToNcbi.R
tests/testthat/test-organism.R
todo.org
