organism: Organism

In acidgenomics/AcidGenomes: Acid Genomics Genome Annotations

Organism

Description

Organism

Usage

organism(object)

organism(object) <- value

## S4 method for signature 'Annotated'
organism(object)

## S4 method for signature 'DFrame'
organism(object)

## S4 method for signature 'GRanges'
organism(object)

## S4 method for signature 'Matrix'
organism(object)

## S4 method for signature 'data.frame'
organism(object)

## S4 method for signature 'matrix'
organism(object)

## S4 replacement method for signature 'Annotated'
organism(object) <- value

Arguments

object	Object.
value	Value to assign.

Value

character(1). Latin organism name (e.g. Homo sapiens).

Note

Updated 2021-08-03.

See Also

detectOrganism().

Examples

## DFrame ====
df <- S4Vectors::DataFrame(
    "txId" = c(
        "ENST00000635602.1",
        "ENST00000635506.1"
    ),
    "geneId" = c(
        "ENSG00000283061.1",
        "ENSG00000283061.1"
    ),
    row.names = c(
        "ENST00000635602.1",
        "ENST00000635506.1"
    )
)
x <- organism(df)
print(x)

acidgenomics/AcidGenomes documentation built on Dec. 10, 2023, 10:35 p.m.