makeEnsDbFromGff: Make EnsDb object from a GFF/GTF file

In acidgenomics/AcidGenomes: Acid Genomics Genome Annotations

Make EnsDb object from a GFF/GTF file

Description

Wrapper for ensembldb importer functions.

Usage

makeEnsDbFromGff(file)

Arguments

file	character(1). File path.

Value

EnsDb.

Note

Updated 2023-11-29.

See Also

• ensembldb::ensDbFromGff().

• ensembldb::ensDbFromGtf().

Examples

## > file <- AcidBase::pasteUrl(
## >     "ftp.ensembl.org",
## >     "pub",
## >     "release-102",
## >     "gtf",
## >     "homo_sapiens",
## >     "Homo_sapiens.GRCh38.102.gtf.gz",
## >     protocol = "ftp"
## > )
## > edb <- makeEnsDbFromGff(file)
## > print(edb)

acidgenomics/AcidGenomes documentation built on Dec. 10, 2023, 10:35 p.m.