TxToGene: Transcript-to-gene mappings

In acidgenomics/r-acidgenomes: Acid Genomics Genome Annotations

Transcript-to-gene mappings

Description

Transcript-to-gene mappings

Usage

TxToGene(object, ...)

## S4 method for signature 'DFrame'
TxToGene(object, quiet = FALSE)

## S4 method for signature 'GRanges'
TxToGene(object, ...)

## S4 method for signature 'GRangesList'
TxToGene(object, ...)

## S4 method for signature 'data.frame'
TxToGene(object, ...)

## S4 method for signature 'matrix'
TxToGene(object, ...)

Arguments

object	Object.
quiet	logical(1). Perform command quietly, suppressing messages.
...	Arguments pass through to DFrame method.

Value

TxToGene.

Note

Updated 2023-11-29.

See Also

makeTxToGene().

Examples

## DFrame ====
df <- S4Vectors::DataFrame(
    "txId" = c(
        "ENST00000635602.1",
        "ENST00000635506.1"
    ),
    "geneId" = c(
        "ENSG00000283061.1",
        "ENSG00000283061.1"
    )
)
object <- TxToGene(df)
print(object)

acidgenomics/r-acidgenomes documentation built on Jan. 12, 2024, 4:06 a.m.