Files in acidgenomics/r-acidsinglecell
Acid Genomics Single Cell Experiment
.Rbuildignore
.gitignore
.lintr
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/AllClasses.R
R/AllGenerics.R
R/AllGlobals.R
R/CellCycleMarkers.R
R/CellTypeMarkers.R
R/aggregate-methods.R
R/aggregateCellsToSamples-methods.R
R/barcodeRanksPerSample-methods.R
R/cellCountsPerCluster-methods.R
R/cellToSample-methods.R
R/cellTypesPerCluster-methods.R
R/clusters-methods.R
R/combine-methods.R
R/convertSampleIdsToNames-methods.R
R/cpm-methods.R
R/data.R
R/diffExp-methods.R
R/diffExpPerCluster-methods.R
R/export-methods.R
R/filterCells-methods.R
R/findMarkers-methods.R
R/geometricMean-methods.R
R/indropsSampleIndexCounts.R
R/internal-groups.R
R/internal-markers.R
R/makeSingleCellExperiment.R
R/mapCellsToSamples.R
R/melt-methods.R
R/metrics-methods.R
R/normalize-methods.R
R/package.R
R/sampleData-methods.R
R/selectSamples-methods.R
R/show-methods.R
R/subsetPerSample-methods.R
R/topCellsPerSample-methods.R
R/zerosVsDepth-methods.R
README.md
_pkgdown.yml
data/cellCycleMarkersList.rda
data/cellTypeMarkersList.rda
inst/extdata/markers/cell-cycle/drosophila-melanogaster.csv
inst/extdata/markers/cell-cycle/homo-sapiens.csv
inst/extdata/markers/cell-cycle/mus-musculus.csv
inst/extdata/markers/cell-type/drosophila-melanogaster.csv
inst/extdata/markers/cell-type/homo-sapiens.csv
inst/extdata/markers/cell-type/mus-musculus.csv
inst/extdata/markers/ensembl-release.txt
inst/extdata/markers/lineages.csv
inst/extdata/markers/synonyms.csv
man/AcidSingleCell-package.Rd
man/AcidSingleCellTestsUrl.Rd
man/CellCycleMarkers-class.Rd
man/CellCycleMarkers.Rd
man/CellTypeMarkers-class.Rd
man/CellTypeMarkers.Rd
man/KnownMarkers-class.Rd
man/aggregate.Rd
man/aggregateCellsToSamples.Rd
man/barcodeRanksPerSample.Rd
man/cellCountsPerCluster.Rd
man/cellCycleMarkersList.Rd
man/cellToSample.Rd
man/cellTypeMarkersList.Rd
man/cellTypesPerCluster.Rd
man/clusters.Rd
man/combine.Rd
man/convertSampleIdsToNames.Rd
man/cpm.Rd
man/diffExp.Rd
man/diffExpPerCluster.Rd
man/export.Rd
man/filterCells.Rd
man/findMarkers.Rd
man/geometricMean.Rd
man/indropsSampleIndexCounts.Rd
man/makeSingleCellExperiment.Rd
man/mapCellsToSamples.Rd
man/melt.Rd
man/metrics.Rd
man/normalize.Rd
man/sampleData.Rd
man/selectSamples.Rd
man/show.Rd
man/subsetPerSample.Rd
man/topCellsPerSample.Rd
man/zerosVsDepth.Rd
package.Rproj
pkgdown/extra.css
tests/testthat.R
tests/testthat/.gitignore
tests/testthat/helper-cache.R
tests/testthat/helper-globals.R
tests/testthat/test-CellCycleMarkers.R
tests/testthat/test-CellTypeMarkers.R
tests/testthat/test-aggregate.R
tests/testthat/test-cellToSample.R
tests/testthat/test-cellTypesPerCluster.R
tests/testthat/test-combine.R
tests/testthat/test-convertSampleIdsToNames.R
tests/testthat/test-diffExp.R
tests/testthat/test-export.R
tests/testthat/test-filterCells.R
tests/testthat/test-makeSingleCellExperiment.R
tests/testthat/test-mapCellsToSamples.R
tests/testthat/test-melt.R
tests/testthat/test-metrics.R
tests/testthat/test-metricsPerSample.R
tests/testthat/test-normalize.R
tests/testthat/test-sampleData.R
tests/testthat/test-sampleNames.R
tests/testthat/test-selectSamples.R
tests/testthat/test-subsetPerSample.R
tests/testthat/test-topCellsPerSample.R
tests/testthat/test-zerosVsDepth.R
todo.org
