cpm: Counts per million

In acidgenomics/r-acidsinglecell: Acid Genomics Single Cell Experiment

Counts per million

Description

Counts per million

Usage

cpm(object, ...)

## S4 method for signature 'SingleCellExperiment'
cpm(object)

Arguments

object

Object.

Value

matrix

Note

Updated 2022-03-02.

See Also

• SingleCellExperiment::cpm().

• edgeR::cpm().

• scuttle::calculateCPM().

Examples

data(SingleCellExperiment_splatter, package = "AcidTest")

## SingleCellExperiment ====
object <- SingleCellExperiment_splatter
object <- AcidExperiment::estimateSizeFactors(object)
cpm <- cpm(object)
class(cpm)
mean(cpm)

acidgenomics/r-acidsinglecell documentation built on March 30, 2024, 5:39 a.m.