metrics: Quality control metrics

In acidgenomics/r-acidsinglecell: Acid Genomics Single Cell Experiment

Quality control metrics

Description

Quality control metrics

Usage

metrics(object, ...)

metricsPerSample(object, ...)

## S4 method for signature 'SingleCellExperiment'
metrics(object)

## S4 method for signature 'SingleCellExperiment'
metricsPerSample(object, fun = c("mean", "median", "sum"))

Arguments

object	Object.
fun	function.
...	Additional arguments.

Value

data.frame

Functions

• metrics(SingleCellExperiment): Cell-level metrics.

• metricsPerSample(SingleCellExperiment): Sample-level metrics.

Note

Updated 2022-03-02.

Author(s)

Michael Steinbaugh, Rory Kirchner

Examples

data(SingleCellExperiment_splatter, package = "AcidTest")

## SingleCellExperiment ====
object <- SingleCellExperiment_splatter
object <- AcidExperiment::calculateMetrics(object)
x <- metrics(object)
print(x)
x <- metricsPerSample(object, fun = "mean")
print(x)

acidgenomics/r-acidsinglecell documentation built on March 30, 2024, 5:39 a.m.