standardizeStrainNames: Standardize strain names
In acorg/acutilsLite: A package for working with CPE databases
Description
Usage
Arguments
Value
View source: R/acdatabase_names.R
Description
Standardize strain names
Usage
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standardizeStrainNames(
names,
default_species = NA,
default_virus_type = "A",
default_virus_subtype = "HXNX",
stop_on_error = TRUE
)
Arguments
names
Strain names to be standardised
default_species
Are the strains isolated from a particular species?
default_virus_type
Default virus type to be used \(if not no type found in name\)
default_virus_subtype
Default virus subtype to be used \(if not no subtype found in name\)
Value
Returns a list of standardised names and extracted information
acorg/acutilsLite documentation built on Feb. 19, 2021, 4:56 p.m.
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Description Usage Arguments Value
View source: R/acdatabase_names.R
Description
Standardize strain names
Usage
1 2 3 4 5 6 7 | standardizeStrainNames(
names,
default_species = NA,
default_virus_type = "A",
default_virus_subtype = "HXNX",
stop_on_error = TRUE
)
|
Arguments
names |
Strain names to be standardised |
default_species |
Are the strains isolated from a particular species? |
default_virus_type |
Default virus type to be used \(if not no type found in name\) |
default_virus_subtype |
Default virus subtype to be used \(if not no subtype found in name\) |
Value
Returns a list of standardised names and extracted information
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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