API for adele/FamilyBasedPGMs
Methods for Learning Genetic and Environmental Graphical Models from Family Data
| Global functions | |
|---|---|
| adjustPValuesMatrix | Source code |
| adjustSymmetricPValuesMatrix | Source code |
| calculateBlockDiagonal2PhiMatrix | Man page Source code |
| checkUnconfoundedEstimatesList | Source code |
| computeFC | Source code |
| computeSinglePhenotype | Source code |
| convertInvCovToPCor | Source code |
| familyBasedCITest | Man page Source code |
| familyBasedPCorTest | Source code |
| fixNonPositiveDefiniteMatrix | Source code |
| fixNonPositiveDefiniteMatrixIter | Source code |
| generateFamilyDAG | Source code |
| generateFamilyDependentFCI_SEM | Source code |
| generateFamilyDependentSEM | Source code |
| getAdjMatrixFromSymmetricPCor | Source code |
| getAdjMatrixFromSymmetricPCorPvalues | Source code |
| getFCIScenarioParameters | Source code |
| getFamilyBasedPCorResults | Source code |
| getKinshipList | Source code |
| getNClosestPoints | Source code |
| getPCorInfo | Source code |
| getPartialCorrelationMatrix | Source code |
| getPartialCorrelationMatrixFromInvCov | Source code |
| getRetVec | Source code |
| getScenarioParameters | Source code |
| getScenarioParametersFromList | Source code |
| getStableEstimateIdx | Source code |
| getUnconfoundedEstimates | Source code |
| getUndirectedGraphFromCov | Source code |
| getUndirectedGraphFromPCor | Source code |
| getUndirectedGraphFromPCorPvalues | Source code |
| intervalPercentage | Source code |
| isPcorInfoComplete | Source code |
| learnFamilyBasedDAGs | Man page Source code |
| learnFamilyBasedUDGs | Man page Source code |
| matrixSqrt | Source code |
| mymcrotate | Source code |
| mypmax | Source code |
| mypmin | Source code |
| plotFamilyPedigree | Man page Source code |
| preprocessFamilyBasedDAGs | Source code |
| preprocessFamilyBasedUDGs | Source code |
| printEdgeList | Source code |
| saveEdgeResultsPlot | Source code |
| scen1 | Man page |
| scen2 | Man page |
| scen3 | Man page |
| scen4 | Man page |
| scen5 | Man page |
| selectBestResult | Source code |
| selectBestUDGPCorMatrices | Source code |
| selectFamilyBasedPCor | Source code |
| simulatePedigree | Source code |
| simulatePedigrees | Man page Source code |
| symmetrizeMatrix | Source code |
| updatePreprocessedPvaluesTable | Source code |
