Files in adeschen/gprofiler2cytoscape
From functional enrichment results to biological networks
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/enrichViewNet.R
R/methods.R
R/methodsEmap.R
R/methodsEmapInternal.R
R/methodsInternal.R
README.md
_pkgdown.yml
data/demoGOST.RData
data/parentalNapaVsDMSODEG.RData
data/parentalNapaVsDMSOEnrichment.RData
data/rosaNapaVsDMSODEG.RData
data/rosaNapaVsDMSOEnrichment.RData
man/createBasicEmap.Rd
man/createCXJSONForCytoscape.Rd
man/createEnrichMap.Rd
man/createEnrichMapMultiBasic.Rd
man/createEnrichMapMultiComplex.Rd
man/createMetaDataSectionCXJSON.Rd
man/createMultiEmap.Rd
man/createNetwork.Rd
man/createNetworkForCytoscape.Rd
man/demoGOST.Rd
man/enrichViewNet-package.Rd
man/extractInformationWhenIntersection.Rd
man/extractInformationWhenNoIntersection.Rd
man/extractNodesAndEdgesInformation.Rd
man/filterResults.Rd
man/formatInformationForCXJSON.Rd
man/isCytoscapeRunning.Rd
man/manageNameDuplicationInEmap.Rd
man/manageQueryDuplicationInEmap.Rd
man/parentalNapaVsDMSODEG.Rd
man/parentalNapaVsDMSOEnrichment.Rd
man/removeRootTerm.Rd
man/rosaNapaVsDMSODEG.Rd
man/rosaNapaVsDMSOEnrichment.Rd
man/validateCreateEnrichMapArguments.Rd
man/validateCreateEnrichMapMultiArguments.Rd
man/validateCreateEnrichMapMultiComplexArg.Rd
man/validateCreateEnrichMapSubSectionArguments.Rd
man/validateCreateNetworkArguments.Rd
pkgdown/extra.css
tests/testthat.R
tests/testthat/test-methods.R
tests/testthat/test-methodsEmap.R
tests/testthat/test-methodsEmapInternal.R
tests/testthat/test-methodsInternal.R
vignettes/Figure_enrichViewNet_workflow_v05.jpg
vignettes/FromListToGraph_v03.jpg
vignettes/REACTOME_Selected.jpeg
vignettes/cy3sticker.png
vignettes/cytoscape_reactome_all_parental_napa_vs_DMSO.png
vignettes/cytoscape_with_selected_REACTOME_v01.png
vignettes/demo01.jpeg
vignettes/demo_KEGG_emap_v03.jpg
vignettes/enrichViewNet.Rmd
vignettes/enrichViewNet.bibtex
