API for adimitromanolakis/sim1000G
Genotype Simulations for Rare or Common Variants Using Haplotypes from 1000 Genomes
| Global functions | |
|---|---|
| SIM | Man page |
| addIndividualFromGenotypes | Source code |
| addUnrelatedIndividual | Source code |
| addUnrelatedIndividualWithHaplotype | Source code |
| computePairIBD1 | Man page Source code |
| computePairIBD12 | Man page Source code |
| computePairIBD2 | Man page Source code |
| createVCF | Man page Source code |
| crossoverCDFvector | Man page |
| downloadGeneticMap | Man page Source code |
| fgammamod | Source code |
| fstar | Source code |
| generateChromosomeRecombinationPositions | Man page Source code |
| generateFakeWholeGenomeGeneticMap | Man page Source code |
| generateNewHaplotypes | Source code |
| generateRecombinationDistances | Man page |
| generateRecombinationDistances_noInterference | Man page |
| generateSingleRecombinationVector | Man page Source code |
| generateUniformGeneticMap | Man page Source code |
| generateUnrelatedIndividuals | Man page Source code |
| geneticMap | Man page |
| getCMfromBP | Man page Source code |
| loadSimulation | Man page Source code |
| makeCDF | Source code |
| mate | Source code |
| newFamily3generations | Man page Source code |
| newFamilyWithOffspring | Man page Source code |
| newNuclearFamily | Man page Source code |
| pkg.opts | Man page |
| plotRegionalGeneticMap | Man page Source code |
| printMatrix | Man page Source code |
| readGeneticMap | Man page Source code |
| readGeneticMapFromFile | Man page Source code |
| readVCF | Man page Source code |
| refreshPool | Source code |
| reset | Source code |
| resetSimulation | Man page Source code |
| retrieveGenotypes | Man page Source code |
| saveSimulation | Man page Source code |
| setRecombinationModel | Man page Source code |
| sim1000G | Man page |
| sim1000G-package | Man page |
| startSimulation | Man page Source code |
| subsetVCF | Man page Source code |
| writePED | Man page Source code |
