align.end | End alignment |
align.global | Global Alignment of two Protein Interaction Network |
align.local | Local alignment |
align.local.all | All local alignments |
align.local.plot | Local alignment plot plot a local alignment and all the local... |
align.plot | Plot the alignment |
aligns.update | Update aligns |
alin_aux | alin_aux |
buildBlast | No funciona |
cluster.network | Cluster Network |
computeIC | IC |
compute.matrix | Compute Matrix |
compute.matrix.Blast | No funciona |
compute.matrix.Degree | Degree |
compute.matrix.Distance | Distance |
compute.matrix.DSD | DSD |
compute.matrix.FC | FC |
compute.score | Compute score |
cont.type | Cont type |
display.clusters | Display Clusters |
dme | Protein protein interaction network of dme |
dme-dme | Similarity matrix between proteins of dme |
dme-sce | Similarity matrix between proteins of dme and sce |
EC.score | Edge Correctness Score |
EC.score.all | Edges score |
extract.clusters | Extract clusters |
FC.score | Functional Coherence Score |
get.aligns | get aligns |
go | A list of go |
HungarianFinal | Hungarian |
hypergraph.solve | Solve hypergraph |
internal | A list of alignments for the vignette |
is.element2 | is.element2 |
matrix.update | Update Matrix |
net1 | Protein Interaction Network |
net2 | Protein Interaction Network |
read.matrix | Read Matrix |
read.matrix.col3 | Intern |
read.matrix.RData | Intern |
read.matrix.table | Intern |
read.network | Read Network |
read.network.edges | Network edges |
read.network.tab | Network tab |
remove.global | remove global |
sce | Protein protein interaction network of sce |
sce-sce | Similarity matrix between proteins of sce |
search.aligns | Search alignments Search alignments in als from p1 to p2 |
select.aligns | Select alignments |
Sim | Example of similarity network |
Sim1 | Example of similarity network |
Sim2 | Example of similarity network |
sim.score | simScore.aux |
sim.score.all | Similarity Score |
size.score.all | Size score |
splitBIOGRID | split BIOGRID |
splitDIP | split DIP |
splitgene | split gene |
splitrefseq | split refseq |
splituniprot | split uniprot |
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