read.network: Read Network
In adriaalcala/AligNet: Tool to Analyze PPI Networks and Align Networks using AligNet Algorithm algorithm
Description
Read network from a file
Usage
1
2
read.network(fileName, mode = "tab", db = "uniprot", cols = "all",
sep = " ", int.type = TRUE)
Arguments
fileName
directory of network or a data.frame
mode
tab : a file from DIP or BIOGRID of type tab or mitab;
edges: a list of edges with attributes (not necessary)
db
database to select proteins of mode tab (uniprot,DIP,refseq,BIOGRID, gene)
cols
which columns must be selected with mode edges, you can use "all" to
select all columns
sep
separator between columns in edge mode
int.type
boolean to decide if must be select the interaction type in tab mode.
adriaalcala/AligNet documentation built on May 10, 2019, 5:59 a.m.
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Description
Read network from a file
Usage
1 2 | read.network(fileName, mode = "tab", db = "uniprot", cols = "all",
sep = " ", int.type = TRUE)
|
Arguments
fileName |
directory of network or a data.frame |
mode |
tab : a file from DIP or BIOGRID of type tab or mitab; edges: a list of edges with attributes (not necessary) |
db |
database to select proteins of mode tab (uniprot,DIP,refseq,BIOGRID, gene) |
cols |
which columns must be selected with mode edges, you can use "all" to select all columns |
sep |
separator between columns in edge mode |
int.type |
boolean to decide if must be select the interaction type in tab mode. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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